Excavata
- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Excavata
- Diaphoretickes
- Hacrobia
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Amorphea
- Amoebozoa
- Opisthokonta
- Animals
- Fungi)
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Discoba | | Jakobida | | Jakobea | | Jakobida | - Andaluciidae
- Histionidae
- Jakobidae
- Moramonadidae
- Ophirinidae
- Stygiellidae
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| Tsukubamonada | |
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| | | | Pharyngomonada | |
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| Tetramitia | | Lunosea | |
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| Neovahlkampfiea | |
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| Eutetramitia | |
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| | Postgaardia | |
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| Glycomonada | | Diplonemea | |
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| Kinetoplastea | - Bordnamonadidae
- Trypanophididae
| | Prokinetoplastina | - Prokinetoplastida
- Ichthyobodonidae
- Perkinselidae
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| Metakinetoplastina | - Neobodonida
- Allobodonidae
- Neobodonidae
- Rhynchomonadidae
- Parabodonida
- Parabodonidae
- Trypanoplasmatidae
- Bodonida
- Trypanosomatida
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| Euglenida | | Petalomonadea | - Petalomonadida
- Petalomonadidae
- Sphenomonadidae
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| Alistosa | - Decastavida
- Decastavidae
- Keelungiidae
- Lentomonadidae
- Heterostavida
- Ploeotiida
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| Entosiphonea | |
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| Karavia | |
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| Spirocuta | |
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| | | | Anaeromonada | | Anaeromonadea | - Paratrimastigida
- Trimastigida
- Oxymonadida
- Oxymonadidae
- Polymastigidae
- Pyrsonymphidae
- Saccinobaculidae
- Streblomastigidae
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| | | Fornicata | |
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| Parabasalia | | Trichonymphea | - Trichonymphida
- †Burmanymphidae
- Hoplonymphidae
- Spirotrichosomidae
- Staurojoeninidae
- Teratonymphidae
- Trichonymphidae
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| Trichomonadea | - Hexamastigidae
- Cristamonadida
- Calonymphidae
- Devescovinidae
- Hypotrichomonadida
- Spirotrichonymphida
- Trichomonadida
- Tritrichomonadida
- Dientamoebidae
- Monocercomonadidae
- Simplicimonadidae
- Tritrichomonadidae
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