FOXI1

Protein-coding gene in the species Homo sapiens
FOXI1
Identifiers
AliasesFOXI1, FKH10, FKHL10, FREAC-6, FREAC6, HFH-3, HFH3, forkhead box I1
External IDsOMIM: 601093 MGI: 1096329 HomoloGene: 8140 GeneCards: FOXI1
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for FOXI1
Genomic location for FOXI1
Band5q35.1Start170,105,897 bp[1]
End170,109,734 bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for FOXI1
Genomic location for FOXI1
Band11 A4|11 19.65 cMStart34,154,338 bp[2]
End34,158,089 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • kidney

  • minor salivary glands

  • renal medulla

  • skin of abdomen

  • thymus

  • mammary gland

  • prostate

  • thigh

  • stromal cell of endometrium

  • blood
Top expressed in
  • humerus

  • Meckel's cartilage

  • connecting tubule

  • sphenoid bone

  • submandibular gland

  • basisphenoid

  • rib

  • kidney

  • basilar part of occipital bone

  • urethra
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • DNA-binding transcription factor activity
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • sequence-specific DNA binding
  • DNA binding
  • DNA-binding transcription activator activity, RNA polymerase II-specific
  • DNA binding, bending
  • DNA-binding transcription factor activity, RNA polymerase II-specific
Cellular component
  • nucleus
  • nucleolus
  • intracellular membrane-bounded organelle
Biological process
  • positive regulation of transcription, DNA-templated
  • regulation of transcription, DNA-templated
  • inner ear morphogenesis
  • transcription, DNA-templated
  • positive regulation of transcription by RNA polymerase II
  • transcription by RNA polymerase II
  • anatomical structure morphogenesis
  • cell differentiation
  • embryo development ending in birth or egg hatching
  • regulation of transcription by RNA polymerase II
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2299

14233

Ensembl

ENSG00000168269

ENSMUSG00000047861

UniProt

Q12951

Q922I5

RefSeq (mRNA)

NM_012188
NM_144769

NM_023907

RefSeq (protein)

NP_036320
NP_658982

NP_076396

Location (UCSC)Chr 5: 170.11 – 170.11 MbChr 11: 34.15 – 34.16 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Forkhead box I1 is a protein that in humans is encoded by the FOXI1 gene.[5]

This gene belongs to the forkhead family of transcription factors which is characterized by a distinct forkhead domain. The specific function of this gene has not yet been determined; however, it is possible that this gene plays an important role in the development of the cochlea and vestibulum, as well as embryogenesis. Two transcript variants encoding different isoforms have been found for this gene.[5]

Clinical significance

Mutations in this gene are associated with enlarged vestibular aqueduct.[6]

See also

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000168269 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000047861 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ a b "Entrez Gene: Forkhead box I1". Retrieved 2011-12-24.
  6. ^ Yang T, Vidarsson H, Rodrigo-Blomqvist S, Rosengren SS, Enerback S, Smith RJ (June 2007). "Transcriptional control of SLC26A4 is involved in Pendred syndrome and nonsyndromic enlargement of vestibular aqueduct (DFNB4)". American Journal of Human Genetics. 80 (6): 1055–63. doi:10.1086/518314. PMC 1867094. PMID 17503324.

Further reading

  • Rodríguez-Antona C, Bort R, Jover R, Tindberg N, Ingelman-Sundberg M, Gómez-Lechón MJ, Castell JV (May 2003). "Transcriptional regulation of human CYP3A4 basal expression by CCAAT enhancer-binding protein alpha and hepatocyte nuclear factor-3 gamma". Molecular Pharmacology. 63 (5): 1180–9. doi:10.1124/mol.63.5.1180. PMID 12695546. S2CID 34628968.
  • Ferrell RE, Kimak MA, Lawrence EC, Finegold DN (2008). "Candidate gene analysis in primary lymphedema". Lymphatic Research and Biology. 6 (2): 69–76. doi:10.1089/lrb.2007.1022. PMID 18564921.
  • Vidarsson H, Westergren R, Heglind M, Blomqvist SR, Breton S, Enerbäck S (2009). Callaerts P (ed.). "The forkhead transcription factor Foxi1 is a master regulator of vacuolar H-ATPase proton pump subunits in the inner ear, kidney and epididymis". PLOS ONE. 4 (2): e4471. Bibcode:2009PLoSO...4.4471V. doi:10.1371/journal.pone.0004471. PMC 2637605. PMID 19214237.
  • Jonard L, Niasme-Grare M, Bonnet C, Feldmann D, Rouillon I, Loundon N, Calais C, Catros H, David A, Dollfus H, Drouin-Garraud V, Duriez F, Eliot MM, Fellmann F, Francannet C, Gilbert-Dussardier B, Gohler C, Goizet C, Journel H, Mom T, Thuillier-Obstoy MF, Couderc R, Garabédian EN, Denoyelle F, Marlin S (September 2010). "Screening of SLC26A4, FOXI1 and KCNJ10 genes in unilateral hearing impairment with ipsilateral enlarged vestibular aqueduct". International Journal of Pediatric Otorhinolaryngology. 74 (9): 1049–53. doi:10.1016/j.ijporl.2010.06.002. PMID 20621367.
  • Moreno-Estrada A, Aparicio-Prat E, Sikora M, Engelken J, Ramírez-Soriano A, Calafell F, Bosch E (2010). "African signatures of recent positive selection in human FOXI1". BMC Evolutionary Biology. 10 (1): 267. Bibcode:2010BMCEE..10..267M. doi:10.1186/1471-2148-10-267. PMC 2939579. PMID 20809947.
  • Clevidence DE, Overdier DG, Tao W, Qian X, Pani L, Lai E, Costa RH (May 1993). "Identification of nine tissue-specific transcription factors of the hepatocyte nuclear factor 3/forkhead DNA-binding-domain family". Proceedings of the National Academy of Sciences of the United States of America. 90 (9): 3948–52. Bibcode:1993PNAS...90.3948C. doi:10.1073/pnas.90.9.3948. PMC 46423. PMID 7683413.
  • Pierrou S, Hellqvist M, Samuelsson L, Enerbäck S, Carlsson P (October 1994). "Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending". The EMBO Journal. 13 (20): 5002–12. doi:10.1002/j.1460-2075.1994.tb06827.x. PMC 395442. PMID 7957066.
  • Larsson C, Hellqvist M, Pierrou S, White I, Enerbäck S, Carlsson P (December 1995). "Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12)". Genomics. 30 (3): 464–9. doi:10.1006/geno.1995.1266. PMID 8825632.
  • Overdier DG, Ye H, Peterson RS, Clevidence DE, Costa RH (May 1997). "The winged helix transcriptional activator HFH-3 is expressed in the distal tubules of embryonic and adult mouse kidney". The Journal of Biological Chemistry. 272 (21): 13725–30. doi:10.1074/jbc.272.21.13725. PMID 9153225.

External links

  • GeneReviews/NCBI/NIH/UW entry on Pendred Syndrome/DFNB4

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

  • v
  • t
  • e
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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